# Anvi'o 7 ## Anvi'o: integrated multi-omics at scale Anvi'o is a collection of tools and an interactive viewer that allows for determination and inspection of multi-omic data. Location and version: ```console $ which anvi-interactive /local/cluster/anvio-7/bin/anvi-interactive $ anvi-interactive --version Anvi'o .......................................: hope (v7) Profile database .............................: 35 Contigs database .............................: 20 Pan database .................................: 14 Genome data storage ..........................: 7 Auxiliary data storage .......................: 2 Structure database ...........................: 2 Metabolic modules database ...................: 2 tRNA-seq database ............................: 1 ``` To use: Request a PORT forwarding number so that we don't have collisions. E-mail [me](mailto:ed@cqls.oregonstate.edu) and ask for a PORT number. You'll have to use your PORT to access the web browser that will be forwarded through `shell.cgrb.oregonstate.edu`. This PORT is unrelated to any other PORT used to connect to the infrastructure. After you get your PORT, you'll need to modify your ssh command, by adding these flags: `-L ::` Then, when you log in, you will check out the same node (using qrsh) that you specify in your ssh command. You can freely choose any node that you have interactive qrsh access to, but you must use the same node in the `-L` flag to `ssh` as you do to `qrsh` to once inside the network. To activate the anvio enviroment: ```console bash source /local/cluster/anvio/activate.sh ``` This will get you an interactive session that will tunnel through the `shell.cgrb` machine. To test your setup: ```console cp -R /local/cluster/anvio/test-data . cd test-data bash ./run.sh ``` Open your chrome-based browser and navigate to `localhost:PORT` to see your interactive session. software ref: research ref: research ref: