# R 4.3.1 {{< admonition warning "Configuration required" true >}} See the relevant section below to configure this software before use. {{< /admonition >}} ## R-4.3.1 See the latest [news here](https://cran.r-project.org/doc/manuals/r-release/NEWS.html). R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS. [Link to R FAQ from the r-project](https://cran.r-project.org/doc/FAQ/R-FAQ.html) ------------------------------------------------------------------------------- ## To activate this version of R Edit your `$PATH` to include `/local/cluster/micromamba/envs/R-4.3.1/scripts`. ## Setting up your R libraries You can use the pre-installed libraries without additional configuration. If you want to install additional libraries, you will need to create a new directory and set these environment variables that help R find the library location: ```console unset R_LIBS mkdir -p /nfs/dept/lab/home/user/opt/R/library export R_LIBS_USER=/nfs/dept/lab/home/user/opt/R/library ``` For more information, [see here.](../../../tips/posts/new-guidance-on-using-system-r-and-r-libraries) ## Location and version ```console $ which R /local/cluster/micromamba/envs/R-4.3.1/scripts/R $ R --version R version 4.3.1 (2023-06-16) -- "Beagle Scouts" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-conda-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see https://www.gnu.org/licenses/. ``` ## Installed packages ```console $ Rscript -e 'sessioninfo::session_info(pkgs="installed")' ─ Session info ──────────────────────────────────────────────────────────────────────────────── setting value version R version 4.3.1 (2023-06-16) os CentOS Linux 7 (Core) system x86_64, linux-gnu ui X11 language en_US.UTF-8 collate en_US.UTF-8 ctype en_US.UTF-8 tz America/Los_Angeles date 2023-07-26 pandoc 2.5 @ /local/cluster/bin/pandoc ─ Packages ──────────────────────────────────────────────────────────────────────────────────── package * version date (UTC) lib source askpass 1.1 2019-01-13 [2] CRAN (R 4.3.1) backports 1.4.1 2021-12-13 [2] CRAN (R 4.3.1) base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.3.1) bit 4.0.5 2022-11-15 [2] CRAN (R 4.3.1) bit64 4.0.5 2020-08-30 [2] CRAN (R 4.3.1) blob 1.2.4 2023-03-17 [2] CRAN (R 4.3.1) boot 1.3-28.1 2022-11-22 [3] CRAN (R 4.3.0) broom 1.0.5 2023-06-09 [2] CRAN (R 4.3.1) bslib 0.5.0 2023-06-09 [2] CRAN (R 4.3.1) cachem 1.0.8 2023-05-01 [2] CRAN (R 4.3.1) callr 3.7.3 2022-11-02 [2] CRAN (R 4.3.1) cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.3.1) class 7.3-22 2023-05-03 [3] CRAN (R 4.3.0) classInt 0.4-9 2023-02-28 [3] CRAN (R 4.3.0) cli 3.6.1 2023-03-23 [2] CRAN (R 4.3.1) clipr 0.8.0 2022-02-22 [2] CRAN (R 4.3.1) cluster 2.1.4 2022-08-22 [3] CRAN (R 4.3.0) codetools 0.2-19 2023-02-01 [3] CRAN (R 4.3.0) colorspace 2.1-0 2023-01-23 [2] CRAN (R 4.3.1) conflicted 1.2.0 2023-02-01 [2] CRAN (R 4.3.1) cpp11 0.4.5 2023-07-20 [3] CRAN (R 4.3.1) crayon 1.5.2 2022-09-29 [2] CRAN (R 4.3.1) curl 5.0.1 2023-06-07 [2] CRAN (R 4.3.1) data.table 1.14.8 2023-02-17 [2] CRAN (R 4.3.1) DBI 1.1.3 2022-06-18 [3] CRAN (R 4.3.0) dbplyr 2.3.3 2023-07-07 [2] CRAN (R 4.3.1) digest 0.6.33 2023-07-07 [2] CRAN (R 4.3.1) dplyr 1.1.2 2023-04-20 [2] CRAN (R 4.3.1) dtplyr 1.3.1 2023-03-22 [2] CRAN (R 4.3.1) e1071 1.7-13 2023-02-01 [3] CRAN (R 4.3.0) ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.3.1) evaluate 0.21 2023-05-05 [2] CRAN (R 4.3.1) fansi 1.0.4 2023-01-22 [2] CRAN (R 4.3.1) farver 2.1.1 2022-07-06 [2] CRAN (R 4.3.1) fastmap 1.1.1 2023-02-24 [2] CRAN (R 4.3.1) fontawesome 0.5.1 2023-04-18 [2] CRAN (R 4.3.1) forcats 1.0.0 2023-01-29 [2] CRAN (R 4.3.1) foreign 0.8-84 2022-12-06 [3] CRAN (R 4.3.0) fs 1.6.3 2023-07-20 [2] CRAN (R 4.3.1) gargle 1.5.2 2023-07-20 [2] CRAN (R 4.3.1) generics 0.1.3 2022-07-05 [2] CRAN (R 4.3.1) ggplot2 3.4.2 2023-04-03 [2] CRAN (R 4.3.1) glue 1.6.2 2022-02-24 [2] CRAN (R 4.3.1) googledrive 2.1.1 2023-06-11 [2] CRAN (R 4.3.1) googlesheets4 1.1.1 2023-06-11 [2] CRAN (R 4.3.1) gtable 0.3.3 2023-03-21 [2] CRAN (R 4.3.1) haven 2.5.3 2023-06-30 [2] CRAN (R 4.3.1) highr 0.10 2022-12-22 [2] CRAN (R 4.3.1) hms 1.1.3 2023-03-21 [2] CRAN (R 4.3.1) htmltools 0.5.5 2023-03-23 [2] CRAN (R 4.3.1) httr 1.4.6 2023-05-08 [2] CRAN (R 4.3.1) ids 1.0.1 2017-05-31 [2] CRAN (R 4.3.1) isoband 0.2.7 2022-12-20 [2] CRAN (R 4.3.1) jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.3.1) jsonlite 1.8.7 2023-06-29 [2] CRAN (R 4.3.1) KernSmooth 2.23-22 2023-07-10 [3] CRAN (R 4.3.0) knitr 1.43 2023-05-25 [2] CRAN (R 4.3.1) labeling 0.4.2 2020-10-20 [2] CRAN (R 4.3.1) lattice 0.21-8 2023-04-05 [3] CRAN (R 4.3.0) lifecycle 1.0.3 2022-10-07 [2] CRAN (R 4.3.1) lubridate 1.9.2 2023-02-10 [2] CRAN (R 4.3.1) magrittr 2.0.3 2022-03-30 [3] CRAN (R 4.3.0) MASS 7.3-60 2023-05-04 [3] CRAN (R 4.3.0) Matrix 1.6-0 2023-07-08 [3] CRAN (R 4.3.0) memoise 2.0.1 2021-11-26 [2] CRAN (R 4.3.1) mgcv 1.9-0 2023-07-11 [3] CRAN (R 4.3.0) mime 0.12 2021-09-28 [2] CRAN (R 4.3.1) modelr 0.1.11 2023-03-22 [2] CRAN (R 4.3.1) munsell 0.5.0 2018-06-12 [2] CRAN (R 4.3.1) nlme 3.1-162 2023-01-31 [3] CRAN (R 4.3.0) nnet 7.3-19 2023-05-03 [3] CRAN (R 4.3.0) openssl 2.1.0 2023-07-15 [2] CRAN (R 4.3.1) pillar 1.9.0 2023-03-22 [2] CRAN (R 4.3.1) pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.3.1) prettyunits 1.1.1 2020-01-24 [2] CRAN (R 4.3.1) processx 3.8.2 2023-06-30 [2] CRAN (R 4.3.1) progress 1.2.2 2019-05-16 [2] CRAN (R 4.3.1) proxy 0.4-27 2022-06-09 [3] CRAN (R 4.3.0) ps 1.7.5 2023-04-18 [2] CRAN (R 4.3.1) purrr 1.0.1 2023-01-10 [2] CRAN (R 4.3.1) R6 2.5.1 2021-08-19 [2] CRAN (R 4.3.1) ragg 1.2.5 2023-01-12 [3] CRAN (R 4.3.0) rappdirs 0.3.3 2021-01-31 [2] CRAN (R 4.3.1) RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.3.1) Rcpp 1.0.11 2023-07-06 [3] CRAN (R 4.3.0) RcppArmadillo 0.12.4.1.0 2023-06-19 [2] CRAN (R 4.3.1) RcppGSL 0.3.13 2023-01-13 [2] CRAN (R 4.3.1) RcppZiggurat 0.1.6 2020-10-20 [2] CRAN (R 4.3.1) readr 2.1.4 2023-02-10 [2] CRAN (R 4.3.1) readxl 1.4.3 2023-07-06 [2] CRAN (R 4.3.1) rematch 1.0.1 2016-04-21 [2] CRAN (R 4.3.1) rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.3.1) remotes 2.4.2.1 2023-07-18 [2] CRAN (R 4.3.1) reprex 2.0.2 2022-08-17 [2] CRAN (R 4.3.1) Rfast 2.0.8 2023-07-03 [2] CRAN (R 4.3.1) rgdal 1.6-6 2023-04-18 [3] CRAN (R 4.3.0) rlang 1.1.1 2023-04-28 [2] CRAN (R 4.3.1) rmarkdown 2.23 2023-07-01 [2] CRAN (R 4.3.1) rpart 4.1.19 2022-10-21 [3] CRAN (R 4.3.0) rstudioapi 0.15.0 2023-07-07 [2] CRAN (R 4.3.1) rvest 1.0.3 2022-08-19 [2] CRAN (R 4.3.1) s2 1.1.4 2023-05-17 [3] CRAN (R 4.3.0) sass 0.4.7 2023-07-15 [2] CRAN (R 4.3.1) scales 1.2.1 2022-08-20 [2] CRAN (R 4.3.1) selectr 0.4-2 2019-11-20 [2] CRAN (R 4.3.1) sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.3.1) sf 1.0-14 2023-07-11 [3] CRAN (R 4.3.0) sp 2.0-0 2023-06-22 [3] CRAN (R 4.3.1) spatial 7.3-17 2023-07-20 [3] CRAN (R 4.3.1) stringi 1.7.12 2023-01-11 [2] CRAN (R 4.3.1) stringr 1.5.0 2022-12-02 [2] CRAN (R 4.3.1) survival 3.5-5 2023-03-12 [3] CRAN (R 4.3.0) sys 3.4.2 2023-05-23 [2] CRAN (R 4.3.1) systemfonts 1.0.4 2022-02-11 [2] CRAN (R 4.3.1) terra 1.7-39 2023-06-23 [3] CRAN (R 4.3.0) textshaping 0.3.6 2021-10-13 [3] CRAN (R 4.3.0) tibble 3.2.1 2023-03-20 [2] CRAN (R 4.3.1) tidyr 1.3.0 2023-01-24 [2] CRAN (R 4.3.1) tidyselect 1.2.0 2022-10-10 [2] CRAN (R 4.3.1) tidyverse 2.0.0 2023-02-22 [2] CRAN (R 4.3.1) timechange 0.2.0 2023-01-11 [2] CRAN (R 4.3.1) tinytex 0.45 2023-04-18 [2] CRAN (R 4.3.1) tzdb 0.4.0 2023-05-12 [2] CRAN (R 4.3.1) units 0.8-2 2023-04-27 [3] CRAN (R 4.3.0) utf8 1.2.3 2023-01-31 [2] CRAN (R 4.3.1) uuid 1.1-0 2022-04-19 [2] CRAN (R 4.3.1) vctrs 0.6.3 2023-06-14 [2] CRAN (R 4.3.1) viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.3.1) vroom 1.6.3 2023-04-28 [2] CRAN (R 4.3.1) withr 2.5.0 2022-03-03 [2] CRAN (R 4.3.1) wk 0.7.3 2023-05-06 [3] CRAN (R 4.3.0) xfun 0.39 2023-04-20 [2] CRAN (R 4.3.1) xml2 1.3.5 2023-07-06 [2] CRAN (R 4.3.1) yaml 2.3.7 2023-01-23 [2] CRAN (R 4.3.1) [1] /nfs4/core/home/davised/opt/R/x86_64-conda-linux-gnu-library/4.3 [2] /local/cluster/R/x86_64-conda-linux-gnu-library/4.3 [3] /local/cluster/micromamba/envs/R-4.3.1/lib/R/library ─────────────────────────────────────────────────────────────────────────────────────────────── ``` software ref: software ref: research ref: Run `citation()` from an interactive R session