All Tags - CQLS Software Update List

Center for Quantitative Life Sciences @ Oregon State University - Software Updates

Home Updates Tips List Posts Search Index About

Center for Quantitative Life Sciences @ Oregon State University - Software Updates

Home Updates Tips List Posts Search Index About

All Tags

compiled ⁴⁹ omics ⁴³ conda ³⁸ annotation ²⁵ alignment ²² assembly ²¹ python ²¹ utility ¹¹ perl ⁹ genomics ⁷ bakta ⁶ comparative genomics ⁶ java ⁶ QC ⁶ R ⁵ blast ⁴ interproscan ⁴ long reads ⁴ ncbi ⁴ pacbio ⁴ RNA-Seq ⁴ anchorwave ³ assembler ³ db ³ funannotate ³ language ³ metagenome ³ phylogeny ³ polishing ³ 16S ² btop ² busco ² diamond ² error-correction ² interactive ² iqtree ² metabarcoding ² minimap2 ² nanopore ² nextDenovo ² phylogenetics ² population genetics ² prokaryotes ² qiime ² qiime2 ² salmon ² samtools ² SNPs ² sqanti3 ² STAR ² transcriptomics ² trimming ² trinity ² trna ² variant-calling ² whole-genome ² adapters ¹ agat ¹ aligner ¹ amplicon ¹ antismash ¹ anvio ¹ ASVs ¹ augustus ¹ autodock vina ¹ bactopia ¹ bppsuite ¹ bracken ¹ braker2 ¹ canu ¹ centrifuge ¹ consent ¹ console ¹ datasets ¹ differential expression ¹ docking ¹ DRAM ¹ Dsuite ¹ EDTA ¹ EnTAP ¹ ESVs ¹ falco ¹ fasta ¹ fastp ¹ fastq ¹ fasttree ¹ figures ¹ flye ¹ genomescope2 ¹ genomethreader ¹ getorganelle ¹ gfatools ¹ git ¹ gitui ¹ gmap ¹ go ¹ gostripes ¹ graphtyper ¹ gsnap ¹ GTDB ¹ gtdbtk ¹ gth ¹ gtt ¹ hapog ¹ help ¹ hifi ¹ hifiasm ¹ hmmer ¹ infernal ¹ iqtree2 ¹ ITS ¹ itsxpress ¹ javascript ¹ julia ¹ KAT ¹ kraken2 ¹ liftoff ¹ liftofftools ¹ links ¹ long-read ¹ mafft ¹ make_prg ¹ mass-spec ¹ masurca ¹ megahit ¹ merqury ¹ metabat ¹ metabat2 ¹ metaphlan ¹ microbiome ¹ miniasm ¹ MITObim ¹ mitochondria ¹ mmseqs ¹ msms ¹ multiqc ¹ mummer ¹ muscle ¹ muscle5 ¹ ncbi-datasets ¹ nextPolish ¹ NGSEPcore ¹ node ¹ ortholog ¹ pandora ¹ panX ¹ pavian ¹ pb-assembly ¹ PEAR ¹ PGA ¹ picrust2 ¹ piggy ¹ polyploidy ¹ polypolish ¹ popgen ¹ ppanggolin ¹ PPP ¹ primer ¹ primer3 ¹ prokka ¹ qualiy control ¹ ragtag ¹ raven ¹ ribodetector ¹ rmats ¹ rust-mdbg ¹ sans ¹ SAUTE ¹ secondary metabolites ¹ seqenv ¹ seqkit ¹ SequenceBouncer ¹ singularity ¹ SKESA ¹ smalt ¹ snippy ¹ snpeff ¹ spades ¹ spliced aligner ¹ spliced alignment ¹ STITCH ¹ STRIPE-seq ¹ sweepfinder2 ¹ swiss prot ¹ syri ¹ tldr ¹ transcriptome ¹ TransDecoder ¹ treemix ¹ trim_galore ¹ TrimGalore ¹ Trinotate ¹ trnascan ¹ trycycler ¹ variant caller ¹ vcf ¹ vechat ¹ vina ¹ vsearch ¹ w2rap ¹ wfmash ¹

CQLS Home | Biocomputing Home

Powered by Hugo | Theme - LoveIt