Configuration required
See the relevant section below to configure this software before use.
R-4.3.1
See the latest
news here.
R is a free software environment for statistical computing and graphics. It
compiles and runs on a wide variety of UNIX platforms, Windows and MacOS.
Link to R FAQ from the r-project
To activate this version of R
Edit your $PATH to include /local/cluster/micromamba/envs/R-4.3.1/scripts.
Setting up your R libraries
You can use the pre-installed libraries without additional configuration. If
you want to install additional libraries, you will need to create a new
directory and set these environment variables that help R find the library
location:
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unset R_LIBS
mkdir -p /nfs/dept/lab/home/user/opt/R/library
export R_LIBS_USER=/nfs/dept/lab/home/user/opt/R/library
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For more information, see here.
Location and version
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$ which R
/local/cluster/micromamba/envs/R-4.3.1/scripts/R
$ R --version
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-conda-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
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$ Rscript -e 'sessioninfo::session_info(pkgs="installed")'
─ Session info ────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16)
os CentOS Linux 7 (Core)
system x86_64, linux-gnu
ui X11
language en_US.UTF-8
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Los_Angeles
date 2023-07-26
pandoc 2.5 @ /local/cluster/bin/pandoc
─ Packages ────────────────────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
askpass 1.1 2019-01-13 [2] CRAN (R 4.3.1)
backports 1.4.1 2021-12-13 [2] CRAN (R 4.3.1)
base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.3.1)
bit 4.0.5 2022-11-15 [2] CRAN (R 4.3.1)
bit64 4.0.5 2020-08-30 [2] CRAN (R 4.3.1)
blob 1.2.4 2023-03-17 [2] CRAN (R 4.3.1)
boot 1.3-28.1 2022-11-22 [3] CRAN (R 4.3.0)
broom 1.0.5 2023-06-09 [2] CRAN (R 4.3.1)
bslib 0.5.0 2023-06-09 [2] CRAN (R 4.3.1)
cachem 1.0.8 2023-05-01 [2] CRAN (R 4.3.1)
callr 3.7.3 2022-11-02 [2] CRAN (R 4.3.1)
cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.3.1)
class 7.3-22 2023-05-03 [3] CRAN (R 4.3.0)
classInt 0.4-9 2023-02-28 [3] CRAN (R 4.3.0)
cli 3.6.1 2023-03-23 [2] CRAN (R 4.3.1)
clipr 0.8.0 2022-02-22 [2] CRAN (R 4.3.1)
cluster 2.1.4 2022-08-22 [3] CRAN (R 4.3.0)
codetools 0.2-19 2023-02-01 [3] CRAN (R 4.3.0)
colorspace 2.1-0 2023-01-23 [2] CRAN (R 4.3.1)
conflicted 1.2.0 2023-02-01 [2] CRAN (R 4.3.1)
cpp11 0.4.5 2023-07-20 [3] CRAN (R 4.3.1)
crayon 1.5.2 2022-09-29 [2] CRAN (R 4.3.1)
curl 5.0.1 2023-06-07 [2] CRAN (R 4.3.1)
data.table 1.14.8 2023-02-17 [2] CRAN (R 4.3.1)
DBI 1.1.3 2022-06-18 [3] CRAN (R 4.3.0)
dbplyr 2.3.3 2023-07-07 [2] CRAN (R 4.3.1)
digest 0.6.33 2023-07-07 [2] CRAN (R 4.3.1)
dplyr 1.1.2 2023-04-20 [2] CRAN (R 4.3.1)
dtplyr 1.3.1 2023-03-22 [2] CRAN (R 4.3.1)
e1071 1.7-13 2023-02-01 [3] CRAN (R 4.3.0)
ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.3.1)
evaluate 0.21 2023-05-05 [2] CRAN (R 4.3.1)
fansi 1.0.4 2023-01-22 [2] CRAN (R 4.3.1)
farver 2.1.1 2022-07-06 [2] CRAN (R 4.3.1)
fastmap 1.1.1 2023-02-24 [2] CRAN (R 4.3.1)
fontawesome 0.5.1 2023-04-18 [2] CRAN (R 4.3.1)
forcats 1.0.0 2023-01-29 [2] CRAN (R 4.3.1)
foreign 0.8-84 2022-12-06 [3] CRAN (R 4.3.0)
fs 1.6.3 2023-07-20 [2] CRAN (R 4.3.1)
gargle 1.5.2 2023-07-20 [2] CRAN (R 4.3.1)
generics 0.1.3 2022-07-05 [2] CRAN (R 4.3.1)
ggplot2 3.4.2 2023-04-03 [2] CRAN (R 4.3.1)
glue 1.6.2 2022-02-24 [2] CRAN (R 4.3.1)
googledrive 2.1.1 2023-06-11 [2] CRAN (R 4.3.1)
googlesheets4 1.1.1 2023-06-11 [2] CRAN (R 4.3.1)
gtable 0.3.3 2023-03-21 [2] CRAN (R 4.3.1)
haven 2.5.3 2023-06-30 [2] CRAN (R 4.3.1)
highr 0.10 2022-12-22 [2] CRAN (R 4.3.1)
hms 1.1.3 2023-03-21 [2] CRAN (R 4.3.1)
htmltools 0.5.5 2023-03-23 [2] CRAN (R 4.3.1)
httr 1.4.6 2023-05-08 [2] CRAN (R 4.3.1)
ids 1.0.1 2017-05-31 [2] CRAN (R 4.3.1)
isoband 0.2.7 2022-12-20 [2] CRAN (R 4.3.1)
jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.3.1)
jsonlite 1.8.7 2023-06-29 [2] CRAN (R 4.3.1)
KernSmooth 2.23-22 2023-07-10 [3] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [2] CRAN (R 4.3.1)
labeling 0.4.2 2020-10-20 [2] CRAN (R 4.3.1)
lattice 0.21-8 2023-04-05 [3] CRAN (R 4.3.0)
lifecycle 1.0.3 2022-10-07 [2] CRAN (R 4.3.1)
lubridate 1.9.2 2023-02-10 [2] CRAN (R 4.3.1)
magrittr 2.0.3 2022-03-30 [3] CRAN (R 4.3.0)
MASS 7.3-60 2023-05-04 [3] CRAN (R 4.3.0)
Matrix 1.6-0 2023-07-08 [3] CRAN (R 4.3.0)
memoise 2.0.1 2021-11-26 [2] CRAN (R 4.3.1)
mgcv 1.9-0 2023-07-11 [3] CRAN (R 4.3.0)
mime 0.12 2021-09-28 [2] CRAN (R 4.3.1)
modelr 0.1.11 2023-03-22 [2] CRAN (R 4.3.1)
munsell 0.5.0 2018-06-12 [2] CRAN (R 4.3.1)
nlme 3.1-162 2023-01-31 [3] CRAN (R 4.3.0)
nnet 7.3-19 2023-05-03 [3] CRAN (R 4.3.0)
openssl 2.1.0 2023-07-15 [2] CRAN (R 4.3.1)
pillar 1.9.0 2023-03-22 [2] CRAN (R 4.3.1)
pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.3.1)
prettyunits 1.1.1 2020-01-24 [2] CRAN (R 4.3.1)
processx 3.8.2 2023-06-30 [2] CRAN (R 4.3.1)
progress 1.2.2 2019-05-16 [2] CRAN (R 4.3.1)
proxy 0.4-27 2022-06-09 [3] CRAN (R 4.3.0)
ps 1.7.5 2023-04-18 [2] CRAN (R 4.3.1)
purrr 1.0.1 2023-01-10 [2] CRAN (R 4.3.1)
R6 2.5.1 2021-08-19 [2] CRAN (R 4.3.1)
ragg 1.2.5 2023-01-12 [3] CRAN (R 4.3.0)
rappdirs 0.3.3 2021-01-31 [2] CRAN (R 4.3.1)
RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.3.1)
Rcpp 1.0.11 2023-07-06 [3] CRAN (R 4.3.0)
RcppArmadillo 0.12.4.1.0 2023-06-19 [2] CRAN (R 4.3.1)
RcppGSL 0.3.13 2023-01-13 [2] CRAN (R 4.3.1)
RcppZiggurat 0.1.6 2020-10-20 [2] CRAN (R 4.3.1)
readr 2.1.4 2023-02-10 [2] CRAN (R 4.3.1)
readxl 1.4.3 2023-07-06 [2] CRAN (R 4.3.1)
rematch 1.0.1 2016-04-21 [2] CRAN (R 4.3.1)
rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.3.1)
remotes 2.4.2.1 2023-07-18 [2] CRAN (R 4.3.1)
reprex 2.0.2 2022-08-17 [2] CRAN (R 4.3.1)
Rfast 2.0.8 2023-07-03 [2] CRAN (R 4.3.1)
rgdal 1.6-6 2023-04-18 [3] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [2] CRAN (R 4.3.1)
rmarkdown 2.23 2023-07-01 [2] CRAN (R 4.3.1)
rpart 4.1.19 2022-10-21 [3] CRAN (R 4.3.0)
rstudioapi 0.15.0 2023-07-07 [2] CRAN (R 4.3.1)
rvest 1.0.3 2022-08-19 [2] CRAN (R 4.3.1)
s2 1.1.4 2023-05-17 [3] CRAN (R 4.3.0)
sass 0.4.7 2023-07-15 [2] CRAN (R 4.3.1)
scales 1.2.1 2022-08-20 [2] CRAN (R 4.3.1)
selectr 0.4-2 2019-11-20 [2] CRAN (R 4.3.1)
sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.3.1)
sf 1.0-14 2023-07-11 [3] CRAN (R 4.3.0)
sp 2.0-0 2023-06-22 [3] CRAN (R 4.3.1)
spatial 7.3-17 2023-07-20 [3] CRAN (R 4.3.1)
stringi 1.7.12 2023-01-11 [2] CRAN (R 4.3.1)
stringr 1.5.0 2022-12-02 [2] CRAN (R 4.3.1)
survival 3.5-5 2023-03-12 [3] CRAN (R 4.3.0)
sys 3.4.2 2023-05-23 [2] CRAN (R 4.3.1)
systemfonts 1.0.4 2022-02-11 [2] CRAN (R 4.3.1)
terra 1.7-39 2023-06-23 [3] CRAN (R 4.3.0)
textshaping 0.3.6 2021-10-13 [3] CRAN (R 4.3.0)
tibble 3.2.1 2023-03-20 [2] CRAN (R 4.3.1)
tidyr 1.3.0 2023-01-24 [2] CRAN (R 4.3.1)
tidyselect 1.2.0 2022-10-10 [2] CRAN (R 4.3.1)
tidyverse 2.0.0 2023-02-22 [2] CRAN (R 4.3.1)
timechange 0.2.0 2023-01-11 [2] CRAN (R 4.3.1)
tinytex 0.45 2023-04-18 [2] CRAN (R 4.3.1)
tzdb 0.4.0 2023-05-12 [2] CRAN (R 4.3.1)
units 0.8-2 2023-04-27 [3] CRAN (R 4.3.0)
utf8 1.2.3 2023-01-31 [2] CRAN (R 4.3.1)
uuid 1.1-0 2022-04-19 [2] CRAN (R 4.3.1)
vctrs 0.6.3 2023-06-14 [2] CRAN (R 4.3.1)
viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.3.1)
vroom 1.6.3 2023-04-28 [2] CRAN (R 4.3.1)
withr 2.5.0 2022-03-03 [2] CRAN (R 4.3.1)
wk 0.7.3 2023-05-06 [3] CRAN (R 4.3.0)
xfun 0.39 2023-04-20 [2] CRAN (R 4.3.1)
xml2 1.3.5 2023-07-06 [2] CRAN (R 4.3.1)
yaml 2.3.7 2023-01-23 [2] CRAN (R 4.3.1)
[1] /nfs4/core/home/davised/opt/R/x86_64-conda-linux-gnu-library/4.3
[2] /local/cluster/R/x86_64-conda-linux-gnu-library/4.3
[3] /local/cluster/micromamba/envs/R-4.3.1/lib/R/library
───────────────────────────────────────────────────────────────────────────────────────────────
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software ref: https://cran.r-project.org/manuals.html
software ref: https://cran.r-project.org/doc/FAQ/R-FAQ.html
research ref: Run citation() from an interactive R session